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import numpy as np import matplotlib.pyplot as plt import cv2 import torch from skimage import data
def main(): pass
def fast_glcm(img, vmin=0, vmax=255, nbit=8, kernel_size=5): mi, ma = vmin, vmax ks = kernel_size h,w = img.shape
bins = np.linspace(mi, ma+1, nbit+1) gl1 = np.digitize(img, bins) - 1 gl2 = np.append(gl1[:,1:], gl1[:,-1:], axis=1)
glcm = np.zeros((nbit, nbit, h, w), dtype=np.uint8) for i in range(nbit): for j in range(nbit): mask = ((gl1==i) & (gl2==j)) glcm[i,j, mask] = 1
kernel = np.ones((ks, ks), dtype=np.uint8) for i in range(nbit): for j in range(nbit): glcm[i,j] = cv2.filter2D(glcm[i,j], -1, kernel)
glcm = glcm.astype(np.float32) return glcm
def fast_glcm_mean(img, vmin=0, vmax=255, nbit=8, ks=5): ''' calc glcm mean ''' h,w = img.shape glcm = fast_glcm(img, vmin, vmax, nbit, ks) mean = np.zeros((h,w), dtype=np.float32) for i in range(nbit): for j in range(nbit): mean += glcm[i,j] * i / (nbit)**2
return mean
def fast_glcm_std(img, vmin=0, vmax=255, nbit=8, ks=5): ''' calc glcm std ''' h,w = img.shape glcm = fast_glcm(img, vmin, vmax, nbit, ks) mean = np.zeros((h,w), dtype=np.float32) for i in range(nbit): for j in range(nbit): mean += glcm[i,j] * i / (nbit)**2
std2 = np.zeros((h,w), dtype=np.float32) for i in range(nbit): for j in range(nbit): std2 += (glcm[i,j] * i - mean)**2
std = np.sqrt(std2) return std
def fast_glcm_contrast(img, vmin=0, vmax=255, nbit=8, ks=5): ''' calc glcm contrast ''' h,w = img.shape glcm = fast_glcm(img, vmin, vmax, nbit, ks) cont = np.zeros((h,w), dtype=np.float32) for i in range(nbit): for j in range(nbit): cont += glcm[i,j] * (i-j)**2
return cont
def fast_glcm_dissimilarity(img, vmin=0, vmax=255, nbit=8, ks=5): ''' calc glcm dissimilarity ''' h,w = img.shape glcm = fast_glcm(img, vmin, vmax, nbit, ks) diss = np.zeros((h,w), dtype=np.float32) for i in range(nbit): for j in range(nbit): diss += glcm[i,j] * np.abs(i-j)
return diss
def fast_glcm_homogeneity(img, vmin=0, vmax=255, nbit=8, ks=5): ''' calc glcm homogeneity ''' h,w = img.shape glcm = fast_glcm(img, vmin, vmax, nbit, ks) homo = np.zeros((h,w), dtype=np.float32) for i in range(nbit): for j in range(nbit): homo += glcm[i,j] / (1.+(i-j)**2)
return homo
def fast_glcm_ASM(img, vmin=0, vmax=255, nbit=8, ks=5): ''' calc glcm asm, energy ''' h,w = img.shape glcm = fast_glcm(img, vmin, vmax, nbit, ks) asm = np.zeros((h,w), dtype=np.float32) for i in range(nbit): for j in range(nbit): asm += glcm[i,j]**2
ene = np.sqrt(asm) return asm, ene
def fast_glcm_max(img, vmin=0, vmax=255, nbit=8, ks=5): ''' calc glcm max ''' glcm = fast_glcm(img, vmin, vmax, nbit, ks) max_ = np.max(glcm, axis=(0,1)) return max_
def fast_glcm_entropy(img, vmin=0, vmax=255, nbit=8, ks=5): ''' calc glcm entropy ''' glcm = fast_glcm(img, vmin, vmax, nbit, ks) pnorm = glcm / np.sum(glcm, axis=(0,1)) + 1./ks**2 ent = np.sum(-pnorm * np.log(pnorm), axis=(0,1)) return ent
if __name__ == '__main__': nbit = 8 ks = 5 mi, ma = 0, 255
tar_f = '../../data/MNIST/processed/training.pt' imgs, labels = torch.load(tar_f) img = imgs[2]
img = fast_glcm_mean(img, vmin=mi, vmax=ma, nbit=nbit, ks=ks) plt.imshow(img) plt.title('after') plt.show()
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